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Reuben Dorent; Aaron Kujawa; Marina Ivory; Spyridon Bakas; Nikola Rieke; Samuel Joutard; Ben Glocker; Jorge Cardoso; Marc Modat; Kayhan Batmanghelich; Arseniy Belkov; Maria Baldeon Calisto; Jae Won Choi; Benoit M. Dawant; Hexin Dong; Sergio Escalera; Yubo Fan; Lasse Hansen; Mattias P. Heinrich; Smriti Joshi; Victoriya Kashtanova; Hyeon Gyu Kim; Satoshi Kondo; Christian N. Kruse; Susana K. Lai-Yuen; Hao Li; Han Liu; Buntheng Ly; Ipek Oguz; Hyungseob Shin; Boris Shirokikh; Zixian Su; Guotai Wang; Jianghao Wu; Yanwu Xu; Kai Yao; Li Zhang; Sebastien Ourselin, |
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CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwannoma and Cochlea Segmentation |
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Journal Article |
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Year |
2023 |
Publication |
Medical Image Analysis |
Abbreviated Journal |
MIA |
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83 |
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102628 |
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Domain Adaptation; Segmen tation; Vestibular Schwnannoma |
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Domain Adaptation (DA) has recently raised strong interests in the medical imaging community. While a large variety of DA techniques has been proposed for image segmentation, most of these techniques have been validated either on private datasets or on small publicly available datasets. Moreover, these datasets mostly addressed single-class problems. To tackle these limitations, the Cross-Modality Domain Adaptation (crossMoDA) challenge was organised in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021). CrossMoDA is the first large and multi-class benchmark for unsupervised cross-modality DA. The challenge's goal is to segment two key brain structures involved in the follow-up and treatment planning of vestibular schwannoma (VS): the VS and the cochleas. Currently, the diagnosis and surveillance in patients with VS are performed using contrast-enhanced T1 (ceT1) MRI. However, there is growing interest in using non-contrast sequences such as high-resolution T2 (hrT2) MRI. Therefore, we created an unsupervised cross-modality segmentation benchmark. The training set provides annotated ceT1 (N=105) and unpaired non-annotated hrT2 (N=105). The aim was to automatically perform unilateral VS and bilateral cochlea segmentation on hrT2 as provided in the testing set (N=137). A total of 16 teams submitted their algorithm for the evaluation phase. The level of performance reached by the top-performing teams is strikingly high (best median Dice – VS:88.4%; Cochleas:85.7%) and close to full supervision (median Dice – VS:92.5%; Cochleas:87.7%). All top-performing methods made use of an image-to-image translation approach to transform the source-domain images into pseudo-target-domain images. A segmentation network was then trained using these generated images and the manual annotations provided for the source image. |
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HUPBA |
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Admin @ si @ DKI2023 |
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3706 |
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Author |
Manisha Das; Deep Gupta; Petia Radeva; Ashwini M. Bakde |
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Title |
Optimized CT-MR neurological image fusion framework using biologically inspired spiking neural model in hybrid ℓ1 - ℓ0 layer decomposition domain |
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Journal Article |
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Year |
2021 |
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Biomedical Signal Processing and Control |
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BSPC |
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68 |
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102535 |
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Medical image fusion plays an important role in the clinical diagnosis of several critical neurological diseases by merging complementary information available in multimodal images. In this paper, a novel CT-MR neurological image fusion framework is proposed using an optimized biologically inspired feedforward neural model in two-scale hybrid ℓ1 − ℓ0 decomposition domain using gray wolf optimization to preserve the structural as well as texture information present in source CT and MR images. Initially, the source images are subjected to two-scale ℓ1 − ℓ0 decomposition with optimized parameters, giving a scale-1 detail layer, a scale-2 detail layer and a scale-2 base layer. Two detail layers at scale-1 and 2 are fused using an optimized biologically inspired neural model and weighted average scheme based on local energy and modified spatial frequency to maximize the preservation of edges and local textures, respectively, while the scale-2 base layer gets fused using choose max rule to preserve the background information. To optimize the hyper-parameters of hybrid ℓ1 − ℓ0 decomposition and biologically inspired neural model, a fitness function is evaluated based on spatial frequency and edge index of the resultant fused image obtained by adding all the fused components. The fusion performance is analyzed by conducting extensive experiments on different CT-MR neurological images. Experimental results indicate that the proposed method provides better-fused images and outperforms the other state-of-the-art fusion methods in both visual and quantitative assessments. |
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MILAB; no proj |
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Admin @ si @ DGR2021b |
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3636 |
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Cristhian A. Aguilera-Carrasco; Luis Felipe Gonzalez-Böhme; Francisco Valdes; Francisco Javier Quitral Zapata; Bogdan Raducanu |
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Title |
A Hand-Drawn Language for Human–Robot Collaboration in Wood Stereotomy |
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Journal Article |
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2023 |
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IEEE Access |
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ACCESS |
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11 |
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100975 - 100985 |
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This study introduces a novel, hand-drawn language designed to foster human-robot collaboration in wood stereotomy, central to carpentry and joinery professions. Based on skilled carpenters’ line and symbol etchings on timber, this language signifies the location, geometry of woodworking joints, and timber placement within a framework. A proof-of-concept prototype has been developed, integrating object detectors, keypoint regression, and traditional computer vision techniques to interpret this language and enable an extensive repertoire of actions. Empirical data attests to the language’s efficacy, with the successful identification of a specific set of symbols on various wood species’ sawn surfaces, achieving a mean average precision (mAP) exceeding 90%. Concurrently, the system can accurately pinpoint critical positions that facilitate robotic comprehension of carpenter-indicated woodworking joint geometry. The positioning error, approximately 3 pixels, meets industry standards. |
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LAMP |
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no |
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Admin @ si @ AGV2023 |
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3969 |
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Author |
Zhen Xu; Sergio Escalera; Adrien Pavao; Magali Richard; Wei-Wei Tu; Quanming Yao; Huan Zhao; Isabelle Guyon |
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Title |
Codabench: Flexible, easy-to-use, and reproducible meta-benchmark platform |
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Journal Article |
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Year |
2022 |
Publication |
Patterns |
Abbreviated Journal |
PATTERNS |
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3 |
Issue |
7 |
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100543 |
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Machine learning; data science; benchmark platform; reproducibility; competitions |
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Obtaining a standardized benchmark of computational methods is a major issue in data-science communities. Dedicated frameworks enabling fair benchmarking in a unified environment are yet to be developed. Here, we introduce Codabench, a meta-benchmark platform that is open sourced and community driven for benchmarking algorithms or software agents versus datasets or tasks. A public instance of Codabench is open to everyone free of charge and allows benchmark organizers to fairly compare submissions under the same setting (software, hardware, data, algorithms), with custom protocols and data formats. Codabench has unique features facilitating easy organization of flexible and reproducible benchmarks, such as the possibility of reusing templates of benchmarks and supplying compute resources on demand. Codabench has been used internally and externally on various applications, receiving more than 130 users and 2,500 submissions. As illustrative use cases, we introduce four diverse benchmarks covering graph machine learning, cancer heterogeneity, clinical diagnosis, and reinforcement learning. |
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June 24, 2022 |
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Science Direct |
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HuPBA |
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no |
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Admin @ si @ XEP2022 |
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3764 |
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Author |
Oriol Ramos Terrades; Albert Berenguel; Debora Gil |
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Title |
A Flexible Outlier Detector Based on a Topology Given by Graph Communities |
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Journal Article |
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Year |
2022 |
Publication |
Big Data Research |
Abbreviated Journal |
BDR |
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29 |
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100332 |
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Keywords |
Classification algorithms; Detection algorithms; Description of feature space local structure; Graph communities; Machine learning algorithms; Outlier detectors |
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Outlier detection is essential for optimal performance of machine learning methods and statistical predictive models. Their detection is especially determinant in small sample size unbalanced problems, since in such settings outliers become highly influential and significantly bias models. This particular experimental settings are usual in medical applications, like diagnosis of rare pathologies, outcome of experimental personalized treatments or pandemic emergencies. In contrast to population-based methods, neighborhood based local approaches compute an outlier score from the neighbors of each sample, are simple flexible methods that have the potential to perform well in small sample size unbalanced problems. A main concern of local approaches is the impact that the computation of each sample neighborhood has on the method performance. Most approaches use a distance in the feature space to define a single neighborhood that requires careful selection of several parameters, like the number of neighbors.
This work presents a local approach based on a local measure of the heterogeneity of sample labels in the feature space considered as a topological manifold. Topology is computed using the communities of a weighted graph codifying mutual nearest neighbors in the feature space. This way, we provide with a set of multiple neighborhoods able to describe the structure of complex spaces without parameter fine tuning. The extensive experiments on real-world and synthetic data sets show that our approach outperforms, both, local and global strategies in multi and single view settings. |
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August 28, 2022 |
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DAG; IAM; 600.140; 600.121; 600.139; 600.145; 600.159 |
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Admin @ si @ RBG2022a |
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3718 |
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David Masip; Michael S. North ; Alexander Todorov; Daniel N. Osherson |
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Title |
Automated Prediction of Preferences Using Facial Expressions |
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Journal Article |
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2014 |
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PloS one |
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Plos |
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9 |
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2 |
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e87434 |
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We introduce a computer vision problem from social cognition, namely, the automated detection of attitudes from a person's spontaneous facial expressions. To illustrate the challenges, we introduce two simple algorithms designed to predict observers’ preferences between images (e.g., of celebrities) based on covert videos of the observers’ faces. The two algorithms are almost as accurate as human judges performing the same task but nonetheless far from perfect. Our approach is to locate facial landmarks, then predict preference on the basis of their temporal dynamics. The database contains 768 videos involving four different kinds of preferences. We make it publically available. |
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OR;MV |
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Admin @ si @ MNT2014 |
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2453 |
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Alejandro Cartas; Petia Radeva; Mariella Dimiccoli |
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Title |
Activities of Daily Living Monitoring via a Wearable Camera: Toward Real-World Applications |
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Journal Article |
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2020 |
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IEEE Access |
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ACCESS |
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8 |
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77344 - 77363 |
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Activity recognition from wearable photo-cameras is crucial for lifestyle characterization and health monitoring. However, to enable its wide-spreading use in real-world applications, a high level of generalization needs to be ensured on unseen users. Currently, state-of-the-art methods have been tested only on relatively small datasets consisting of data collected by a few users that are partially seen during training. In this paper, we built a new egocentric dataset acquired by 15 people through a wearable photo-camera and used it to test the generalization capabilities of several state-of-the-art methods for egocentric activity recognition on unseen users and daily image sequences. In addition, we propose several variants to state-of-the-art deep learning architectures, and we show that it is possible to achieve 79.87% accuracy on users unseen during training. Furthermore, to show that the proposed dataset and approach can be useful in real-world applications, where data can be acquired by different wearable cameras and labeled data are scarcely available, we employed a domain adaptation strategy on two egocentric activity recognition benchmark datasets. These experiments show that the model learned with our dataset, can easily be transferred to other domains with a very small amount of labeled data. Taken together, those results show that activity recognition from wearable photo-cameras is mature enough to be tested in real-world applications. |
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MILAB; no proj |
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Admin @ si @ CRD2020 |
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3436 |
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Oriol Ramos Terrades; N. Serrano; Albert Gordo; Ernest Valveny; Alfons Juan-Ciscar |
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Interactive-predictive detection of handwritten text blocks |
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Conference Article |
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2010 |
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17th Document Recognition and Retrieval Conference, part of the IS&T-SPIE Electronic Imaging Symposium |
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7534 |
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75340Q–75340Q–10 |
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A method for text block detection is introduced for old handwritten documents. The proposed method takes advantage of sequential book structure, taking into account layout information from pages previously transcribed. This glance at the past is used to predict the position of text blocks in the current page with the help of conventional layout analysis methods. The method is integrated into the GIDOC prototype: a first attempt to provide integrated support for interactive-predictive page layout analysis, text line detection and handwritten text transcription. Results are given in a transcription task on a 764-page Spanish manuscript from 1891. |
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DRR |
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DAG |
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DAG @ dag @ TSG2010 |
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1479 |
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Xavier Soria; Gonzalo Pomboza-Junez; Angel Sappa |
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LDC: Lightweight Dense CNN for Edge Detection |
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2022 |
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IEEE Access |
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ACCESS |
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10 |
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68281-68290 |
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This paper presents a Lightweight Dense Convolutional (LDC) neural network for edge detection. The proposed model is an adaptation of two state-of-the-art approaches, but it requires less than 4% of parameters in comparison with these approaches. The proposed architecture generates thin edge maps and reaches the highest score (i.e., ODS) when compared with lightweight models (models with less than 1 million parameters), and reaches a similar performance when compare with heavy architectures (models with about 35 million parameters). Both quantitative and qualitative results and comparisons with state-of-the-art models, using different edge detection datasets, are provided. The proposed LDC does not use pre-trained weights and requires straightforward hyper-parameter settings. The source code is released at https://github.com/xavysp/LDC |
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27 June 2022 |
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IEEE |
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MSIAU; MACO; 600.160; 600.167 |
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Admin @ si @ SPS2022 |
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3751 |
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Olivier Penacchio; Xavier Otazu; Laura Dempere-Marco |
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A Neurodynamical Model of Brightness Induction in V1 |
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2013 |
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PloS ONE |
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8 |
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5 |
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e64086 |
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Brightness induction is the modulation of the perceived intensity of an area by the luminance of surrounding areas. Recent neurophysiological evidence suggests that brightness information might be explicitly represented in V1, in contrast to the more common assumption that the striate cortex is an area mostly responsive to sensory information. Here we investigate possible neural mechanisms that offer a plausible explanation for such phenomenon. To this end, a neurodynamical model which is based on neurophysiological evidence and focuses on the part of V1 responsible for contextual influences is presented. The proposed computational model successfully accounts for well known psychophysical effects for static contexts and also for brightness induction in dynamic contexts defined by modulating the luminance of surrounding areas. This work suggests that intra-cortical interactions in V1 could, at least partially, explain brightness induction effects and reveals how a common general architecture may account for several different fundamental processes, such as visual saliency and brightness induction, which emerge early in the visual processing pathway. |
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CIC |
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Admin @ si @ POD2013 |
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2242 |
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