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Author |
Meysam Madadi; Hugo Bertiche; Sergio Escalera |
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Title |
SMPLR: Deep learning based SMPL reverse for 3D human pose and shape recovery |
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Journal Article |
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2020 |
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Pattern Recognition |
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PR |
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106 |
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107472 |
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Deep learning; 3D Human pose; Body shape; SMPL; Denoising autoencoder; Volumetric stack hourglass |
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In this paper we propose to embed SMPL within a deep-based model to accurately estimate 3D pose and shape from a still RGB image. We use CNN-based 3D joint predictions as an intermediate representation to regress SMPL pose and shape parameters. Later, 3D joints are reconstructed again in the SMPL output. This module can be seen as an autoencoder where the encoder is a deep neural network and the decoder is SMPL model. We refer to this as SMPL reverse (SMPLR). By implementing SMPLR as an encoder-decoder we avoid the need of complex constraints on pose and shape. Furthermore, given that in-the-wild datasets usually lack accurate 3D annotations, it is desirable to lift 2D joints to 3D without pairing 3D annotations with RGB images. Therefore, we also propose a denoising autoencoder (DAE) module between CNN and SMPLR, able to lift 2D joints to 3D and partially recover from structured error. We evaluate our method on SURREAL and Human3.6M datasets, showing improvement over SMPL-based state-of-the-art alternatives by about 4 and 12 mm, respectively. |
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HuPBA; no proj |
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Admin @ si @ MBE2020 |
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3439 |
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Author |
Estefania Talavera; Carolin Wuerich; Nicolai Petkov; Petia Radeva |
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Title |
Topic modelling for routine discovery from egocentric photo-streams |
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Journal Article |
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2020 |
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Pattern Recognition |
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PR |
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104 |
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107330 |
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Routine; Egocentric vision; Lifestyle; Behaviour analysis; Topic modelling |
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Developing tools to understand and visualize lifestyle is of high interest when addressing the improvement of habits and well-being of people. Routine, defined as the usual things that a person does daily, helps describe the individuals’ lifestyle. With this paper, we are the first ones to address the development of novel tools for automatic discovery of routine days of an individual from his/her egocentric images. In the proposed model, sequences of images are firstly characterized by semantic labels detected by pre-trained CNNs. Then, these features are organized in temporal-semantic documents to later be embedded into a topic models space. Finally, Dynamic-Time-Warping and Spectral-Clustering methods are used for final day routine/non-routine discrimination. Moreover, we introduce a new EgoRoutine-dataset, a collection of 104 egocentric days with more than 100.000 images recorded by 7 users. Results show that routine can be discovered and behavioural patterns can be observed. |
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MILAB; no proj |
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Admin @ si @ TWP2020 |
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3435 |
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Pau Cano; Alvaro Caravaca; Debora Gil; Eva Musulen |
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Title |
Diagnosis of Helicobacter pylori using AutoEncoders for the Detection of Anomalous Staining Patterns in Immunohistochemistry Images |
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Miscellaneous |
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2023 |
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Arxiv |
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107241 |
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This work addresses the detection of Helicobacter pylori a bacterium classified since 1994 as class 1 carcinogen to humans. By its highest specificity and sensitivity, the preferred diagnosis technique is the analysis of histological images with immunohistochemical staining, a process in which certain stained antibodies bind to antigens of the biological element of interest. This analysis is a time demanding task, which is currently done by an expert pathologist that visually inspects the digitized samples.
We propose to use autoencoders to learn latent patterns of healthy tissue and detect H. pylori as an anomaly in image staining. Unlike existing classification approaches, an autoencoder is able to learn patterns in an unsupervised manner (without the need of image annotations) with high performance. In particular, our model has an overall 91% of accuracy with 86\% sensitivity, 96% specificity and 0.97 AUC in the detection of H. pylori. |
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IAM |
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no |
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Admin @ si @ CCG2023 |
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3855 |
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Author |
Juan Borrego-Carazo; Carles Sanchez; David Castells; Jordi Carrabina; Debora Gil |
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Title |
BronchoPose: an analysis of data and model configuration for vision-based bronchoscopy pose estimation |
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Journal Article |
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Year |
2023 |
Publication |
Computer Methods and Programs in Biomedicine |
Abbreviated Journal |
CMPB |
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228 |
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107241 |
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Videobronchoscopy guiding; Deep learning; Architecture optimization; Datasets; Standardized evaluation framework; Pose estimation |
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Vision-based bronchoscopy (VB) models require the registration of the virtual lung model with the frames from the video bronchoscopy to provide effective guidance during the biopsy. The registration can be achieved by either tracking the position and orientation of the bronchoscopy camera or by calibrating its deviation from the pose (position and orientation) simulated in the virtual lung model. Recent advances in neural networks and temporal image processing have provided new opportunities for guided bronchoscopy. However, such progress has been hindered by the lack of comparative experimental conditions.
In the present paper, we share a novel synthetic dataset allowing for a fair comparison of methods. Moreover, this paper investigates several neural network architectures for the learning of temporal information at different levels of subject personalization. In order to improve orientation measurement, we also present a standardized comparison framework and a novel metric for camera orientation learning. Results on the dataset show that the proposed metric and architectures, as well as the standardized conditions, provide notable improvements to current state-of-the-art camera pose estimation in video bronchoscopy. |
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Elsevier |
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IAM; |
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no |
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Admin @ si @ BSC2023 |
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3702 |
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Author |
Diego Velazquez; Josep M. Gonfaus; Pau Rodriguez; Xavier Roca; Seiichi Ozawa; Jordi Gonzalez |
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Title |
Logo Detection With No Priors |
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Journal Article |
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Year |
2021 |
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IEEE Access |
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ACCESS |
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Volume |
9 |
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Pages |
106998-107011 |
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In recent years, top referred methods on object detection like R-CNN have implemented this task as a combination of proposal region generation and supervised classification on the proposed bounding boxes. Although this pipeline has achieved state-of-the-art results in multiple datasets, it has inherent limitations that make object detection a very complex and inefficient task in computational terms. Instead of considering this standard strategy, in this paper we enhance Detection Transformers (DETR) which tackles object detection as a set-prediction problem directly in an end-to-end fully differentiable pipeline without requiring priors. In particular, we incorporate Feature Pyramids (FP) to the DETR architecture and demonstrate the effectiveness of the resulting DETR-FP approach on improving logo detection results thanks to the improved detection of small logos. So, without requiring any domain specific prior to be fed to the model, DETR-FP obtains competitive results on the OpenLogo and MS-COCO datasets offering a relative improvement of up to 30%, when compared to a Faster R-CNN baseline which strongly depends on hand-designed priors. |
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ISE |
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no |
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Admin @ si @ VGR2021 |
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3664 |
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Author |
Henry Velesaca; Patricia Suarez; Raul Mira; Angel Sappa |
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Title |
Computer Vision based Food Grain Classification: a Comprehensive Survey |
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Journal Article |
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Year |
2021 |
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Computers and Electronics in Agriculture |
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CEA |
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187 |
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106287 |
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This manuscript presents a comprehensive survey on recent computer vision based food grain classification techniques. It includes state-of-the-art approaches intended for different grain varieties. The approaches proposed in the literature are analyzed according to the processing stages considered in the classification pipeline, making it easier to identify common techniques and comparisons. Additionally, the type of images considered by each approach (i.e., images from the: visible, infrared, multispectral, hyperspectral bands) together with the strategy used to generate ground truth data (i.e., real and synthetic images) are reviewed. Finally, conclusions highlighting future needs and challenges are presented. |
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MSIAU; 600.130; 600.122 |
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no |
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Admin @ si @ VSM2021 |
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3576 |
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Author |
Giuseppe Pezzano; Vicent Ribas Ripoll; Petia Radeva |
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CoLe-CNN: Context-learning convolutional neural network with adaptive loss function for lung nodule segmentation |
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Journal Article |
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Year |
2021 |
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Computer Methods and Programs in Biomedicine |
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CMPB |
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198 |
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105792 |
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Background and objective:An accurate segmentation of lung nodules in computed tomography images is a crucial step for the physical characterization of the tumour. Being often completely manually accomplished, nodule segmentation turns to be a tedious and time-consuming procedure and this represents a high obstacle in clinical practice. In this paper, we propose a novel Convolutional Neural Network for nodule segmentation that combines a light and efficient architecture with innovative loss function and segmentation strategy. Methods:In contrast to most of the standard end-to-end architectures for nodule segmentation, our network learns the context of the nodules by producing two masks representing all the background and secondary-important elements in the Computed Tomography scan. The nodule is detected by subtracting the context from the original scan image. Additionally, we introduce an asymmetric loss function that automatically compensates for potential errors in the nodule annotations. We trained and tested our Neural Network on the public LIDC-IDRI database, compared it with the state of the art and run a pseudo-Turing test between four radiologists and the network. Results:The results proved that the behaviour of the algorithm is very near to the human performance and its segmentation masks are almost indistinguishable from the ones made by the radiologists. Our method clearly outperforms the state of the art on CT nodule segmentation in terms of F1 score and IoU of and respectively. Conclusions: The main structure of the network ensures all the properties of the UNet architecture, while the Multi Convolutional Layers give a more accurate pattern recognition. The newly adopted solutions also increase the details on the border of the nodule, even under the noisiest conditions. This method can be applied now for single CT slice nodule segmentation and it represents a starting point for the future development of a fully automatic 3D segmentation software. |
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MILAB; no proj |
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Admin @ si @ PRR2021 |
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3530 |
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Iban Berganzo-Besga; Hector A. Orengo; Felipe Lumbreras; Paloma Aliende; Monica N. Ramsey |
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Automated detection and classification of multi-cell Phytoliths using Deep Learning-Based Algorithms |
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Journal Article |
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2022 |
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Journal of Archaeological Science |
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JArchSci |
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148 |
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105654 |
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This paper presents an algorithm for automated detection and classification of multi-cell phytoliths, one of the major components of many archaeological and paleoenvironmental deposits. This identification, based on phytolith wave pattern, is made using a pretrained VGG19 deep learning model. This approach has been tested in three key phytolith genera for the study of agricultural origins in Near East archaeology: Avena, Hordeum and Triticum. Also, this classification has been validated at species-level using Triticum boeoticum and dicoccoides images. Due to the diversity of microscopes, cameras and chemical treatments that can influence images of phytolith slides, three types of data augmentation techniques have been implemented: rotation of the images at 45-degree angles, random colour and brightness jittering, and random blur/sharpen. The implemented workflow has resulted in an overall accuracy of 93.68% for phytolith genera, improving previous attempts. The algorithm has also demonstrated its potential to automatize the classification of phytoliths species with an overall accuracy of 100%. The open code and platforms employed to develop the algorithm assure the method's accessibility, reproducibility and reusability. |
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December 2022 |
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MSIAU; MACO; 600.167 |
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Admin @ si @ BOL2022 |
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3753 |
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Giuseppe Pezzano; Oliver Diaz; Vicent Ribas Ripoll; Petia Radeva |
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CoLe-CNN+: Context learning – Convolutional neural network for COVID-19-Ground-Glass-Opacities detection and segmentation |
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2021 |
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Computers in Biology and Medicine |
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CBM |
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136 |
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104689 |
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The most common tool for population-wide COVID-19 identification is the Reverse Transcription-Polymerase Chain Reaction test that detects the presence of the virus in the throat (or sputum) in swab samples. This test has a sensitivity between 59% and 71%. However, this test does not provide precise information regarding the extension of the pulmonary infection. Moreover, it has been proven that through the reading of a computed tomography (CT) scan, a clinician can provide a more complete perspective of the severity of the disease. Therefore, we propose a comprehensive system for fully-automated COVID-19 detection and lesion segmentation from CT scans, powered by deep learning strategies to support decision-making process for the diagnosis of COVID-19. |
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MILAB; no menciona |
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Admin @ si @ PDR2021 |
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3635 |
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Author |
Joakim Bruslund Haurum; Meysam Madadi; Sergio Escalera; Thomas B. Moeslund |
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Multi-scale hybrid vision transformer and Sinkhorn tokenizer for sewer defect classification |
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Journal Article |
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2022 |
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Automation in Construction |
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AC |
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144 |
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104614 |
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Sewer Defect Classification; Vision Transformers; Sinkhorn-Knopp; Convolutional Neural Networks; Closed-Circuit Television; Sewer Inspection |
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A crucial part of image classification consists of capturing non-local spatial semantics of image content. This paper describes the multi-scale hybrid vision transformer (MSHViT), an extension of the classical convolutional neural network (CNN) backbone, for multi-label sewer defect classification. To better model spatial semantics in the images, features are aggregated at different scales non-locally through the use of a lightweight vision transformer, and a smaller set of tokens was produced through a novel Sinkhorn clustering-based tokenizer using distinct cluster centers. The proposed MSHViT and Sinkhorn tokenizer were evaluated on the Sewer-ML multi-label sewer defect classification dataset, showing consistent performance improvements of up to 2.53 percentage points. |
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Dec 2022 |
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HuPBA |
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Admin @ si @ BME2022c |
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3780 |
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